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| D. Botman; J.A. Kaandorp and P.M.A. Sloot: An integrated approach to infer the gene network in early development of the cnidarian Nematostella venctensis, in T.C.G. Bosch and T.W. Holstein, editors, Searching for Eve: Basal metazoans and the evolution of multicellular complexity, (abstract) International Workshop: Searching for Eve, pp. 101-101. Tutzing, Germany, 2011.
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| D. Botman and J.A. Kaandorp: An integrated approach to infer the gene network in early development of the cnidarian Nematostella vectensis., ISNB 2011: The 8th International Symposium on Networks in Bioinformatics, Amsterdam, 2011.
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| J.U. Hammel; M.V. Filatov; J. Herzen; F. Beckmann; J.A. Kaandorp and M. Nickel: The non-hierarchical, non-uniformly branching topology of a leuconoid sponge aquiferous system revealed by 3D reconstruction and morphometrics using corrosion casting and X-ray microtomography, Acta Zoologica, (preview) 12 pages. 2011. (DOI: 10.1111/j.1463-6395.2010.00492.x)
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| 4
| N. Javaheri; C. Mendes Cronemberger and J.A. Kaandorp: A Particle-Based Model for Aggregate Formation in Biomineralization, in V. Matranga, editor, Molecular Biomineralization in marine organisms: Nanobiotechnology and biomedical application, (abstract) Biomintec International Workshop, pp. 23-23. IBIM institute, Palermo, Italy, February 2011.
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| J.A. Kaandorp; C. Mendes Cronemberger and L. Huisman: A spatial model of calcification in scleractinian corals, in V. Matranga, editor, Molecular Biomineralization in marine organisms: Nanobiotechnology and biomedical application, (abstract) Biomintec International Workshop, pp. 14-14. IBIM institute, Palermo, Italy, February 2011.
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| J.A. Kaandorp; M.V. Filatov and N. Chindapol: Simulating and quantifying the environmental influence on coral growth and form, in Z. Dubinsky & N. Stambler, editor, Coral Reefs: An Ecosystem in Transition, pp. 177-185. Springer-verlag, Heidelberg, 2011. (DOI: 10.1007/978-94-007-0114-4_11)
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| P. Ramos-Silva; C. Combet; F. Marin and J.A. Kaandorp: Finding patterns and differences on biomineralization-related proteins from Metazoans, in V. Matranga, editor, Molecular Biomineralization in marine organisms: Nanobiotechnology and biomedical application, (abstract) Biomintec International Workshop, pp. 21-21. IBIM institute, Palermo, Italy, February 2011.
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| 8
| C. Tamulonis; M. Postma; H.Q. Marlow; C.R. Magie; J. de Jong and J.A. Kaandorp: A cell-based model of Nematostella vectensis gastrulation including bottle cell formation, invagination and zippering, Developmental Biology, vol. 351, nr 1 pp. 217-228. 2011. (DOI: 10.1016/j.ydbio.2010.10.017)
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| 9
| C.V.T. Tamulonis; M. Postma and J.A. Kaandorp: Modeling Filamentous Cyanobacteria Reveals the Advantages of Long and Fast Trichomes for Optimizing Light Exposure, PLoS One, vol. 6, nr 7 2011.
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| 10
| D. Botman and J.A. Kaandorp: An integrated approach to infer and model the gene network in early development of the cnidarian Nematostella vectensis, in Kaandorp,J.A.; Meesters,E.; Osinga,R.; Verreth,J.A.J. and Wijgerde,T.H.M., editors, Euro ISRS symposium 2010: Reefs in a changing environment, book of abstracts, (abstract) Euro ISRS symposium 2010, pp. 62-62. 2010.
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| 11
| J. Cui; J.A. Kaandorp; P.M.A. Sloot and P.S. Thiagarajan: Simulating Calcineurin-Centered Calcium Signaling Network in Cardiac Myocytes, in J.E. García and V.R. Wright, editors, Congestive Heart Failure: Symptoms, Causes and Treatment, in series Cardiology Research and Clinical Developments, pp. 111-127. Nova Publishers, 2010. ISBN 978-1-60876-677-2.
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| M.V. Filatov; J.A. Kaandorp; M. Postma; R. van Liere; K.J. Kruszynski; M.J.A. Vermeij; G.J. Streekstra and R.P.M. Bak: A comparison between coral colonies of the genus Madracis and simulated forms, Proceedings of the Royal Society of London. Series B-Biological Sciences, vol. 277, nr 1700 pp. 3555-3561. 2010. (DOI: 10.1098/rspb.2010.0957)
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| P.R. Frade; M.C. Reyes-Nivia; J. Faria; J.A. Kaandorp; P.C. Luttikhuizen and R.P.M. Bak: Semi-permeable species boundaries in the coral genus Madracis: Introgression in a brooding coral system, Molecular Phylogenetics and Evolution, vol. 57, nr 3 pp. 1072-1090. 2010. (DOI: 10.1016/j.ympev.2010.09.010)
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| 14
| J.A. Kaandorp; E. Meesters; R. Osinga; J. Verreth and T.H.M. Wijgerde: Euro ISRS symposium 2010: reefs in a changing environment (book of abstracts), Grafisch Service Center, Wageningen, the Netherlands, Wageningen, the Netherlands, 2010. ISBN 978-90-8585-897-3.
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| 15
| J.A. Kaandorp and N. Javaheri: Modeling skeletal growth in sponges and absorption of silicic acid, in Euro Evo Devo 2010, Euro Evo Devo, European society for Evolutionary Developmental biology, Paris, 2010.
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| 16
| M. Ashyraliyev; Y. Fomekong-Nanfack; J.A. Kaandorp and J.G. Blom: Systems biology: parameter estimation for biochemical models, FEBS Journal, vol. 276, nr 4 pp. 886-902. Wiley InterScience, January 2009. (DOI: 10.1111/j.1742-4658.2008.06844.x)
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| J. Cui; J.A. Kaandorp; P.M.A. Sloot; C.M. Lloyd and M.V. Filatov: Calcium Homeostasis and Signaling in Yeast Cells and Cardiac Myocytes, FEMS Yeast Research, vol. 9, nr 8 pp. 1137-1147. Wiley InterScience, Aug 2009. (DOI: 10.1111/j.1567-1364.2009.00552.x)
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| 18
| J. Cui; J.A. Kaandorp; O.O. Ositelu; V. Beaudry; A. Knight; Y. Fomekong-Nanfack and K.W. Cunningham: Simulating Calcium Influx and Free Calcium Concentrations in Yeast, Cell Calcium, vol. 45, nr 2 pp. 123-132. 2009. (DOI: 10.1016/j.ceca.2008.07.005)
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| 19
| Y. Fomekong-Nanfack; M. Postma and J.A. Kaandorp: Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis, BMC Systems Biology, vol. 3, nr 94 BioMed Central Ltd., September 2009. (DOI: 10.1186/1752-0509-3-94)
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| Y. Fomekong-Nanfack; M. Postma and J.A. Kaandorp: Inferring Drosophila gap gene regulatory network: pattern analysis of simulated gene expression profiles and stability analysis, BMC Res Notes, vol. 2, nr 256 BioMed Central Ltd., December 2009. (DOI: 10.1186/1756-0500-2-256)
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| 21
| J. Cui; J.A. Kaandorp and C.M. Lloyd: Simulating In Vitro Transcriptional Response of Zinc Homeostasis System in Escherichia coli, BMC Systems Biology, vol. 2, pp. 89+14. 2008. (DOI: 10.1186/1752-0509-2-89)
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| 22
| J. Cui and J.A. Kaandorp: Simulating Complex Calcium-Calcineurin Signaling Network, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 5103, pp. 110-119. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69388-8.
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| 23
| J.A. Kaandorp: Book review: P. Pelce, New visions on growth and form: fingering growth, dendrites, and flames, Mathematical Biosciences, 2008.
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| 24
| J.A. Kaandorp: Exploring Theoretical Morphospaces, Book review: The Geometry of Evolution: Adaptive Landscapes and Theoretical Morphospaces. George R. McGhee, BioScience, 2008.
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| 25
| J.A. Kaandorp; J.G. Blom; J. Verhoef; M.V. Filatov; M. Postma and W.E.G. Müller: Modelling genetic regulation of growth and form in a branching sponge, Proc. Roy. Soc. B, vol. 275, nr 1651 pp. 2569-2575. November 2008. (DOI: 10.1098/rspb.2008.0746)
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| 26
| X. Wang; D. Brandt; H.C. Schröder; J. Li; A. Boreiko; U. Schlossmacher; J.A. Kaandorp; H. Gotz; H. Duschner and W.E.G. Müller: Axial growth of hexactinellid spicules: formation of cone-like structural units in the giant basal spicules of the hexactinellid Monorhaphis, J. of Structural Biology, vol. 164, pp. 270-280. December 2008. (DOI: 10.1016/j.jsb.2008.08.005)
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| 27
| M. Wiens; S.I. Belikov; O.V. Kaluzhnaya; T. Adella; H.C. Schröder; S. Perovic-Ottstadt; J.A. Kaandorp and W.E.G. Müller: Regional and modular expression of morphogenetic factors in the demosponge Lubomirskia baicalensis, Micron, vol. 39, nr 4 pp. 447-460. 2008. (DOI: 10.1016/j.micron.2007.02.003)
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| M. Dobrzyński; J. Vidal Rodríguez; J.A. Kaandorp and J.G. Blom: Computational methods for diffusion-influenced biochemical reactions, Bioinformatics, vol. 23, nr 15 pp. 1969-1977. 2007. (DOI: doi:10.1093/bioinformatics/btm278)
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| 29
| Y. Fomekong-Nanfack; J.A. Kaandorp and J.G. Blom: Efficient parameter estimation for spatio-temporal models of pattern formation: Case study of Drosophila melanogaster, Bioinformatics, vol. 23, nr 24 pp. 3356-3363. 2007. (DOI: doi:10.1093/bioinformatics/btm433)
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| K.J. Kruszynski; J.A. Kaandorp and R. van Liere: A computational method for quantifying morphological variation in scleractinian corals, Coral Reefs, vol. 26, nr 4 pp. 831-840. 2007. (DOI: 10.1007/s00338-007-0270-6)
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| W.E.G. Müller; A. Boreiko; U. Schlossmacher; X. Wang; M. Nawaz Tahir; W. Tremel; D. Brandt; J.A. Kaandorp and H.C. Schröder: Fractal-related assembly of the axial filament in the demosponge Suberites domuncula: relevance to biomineralization and the formation of biogenic silica,, Biomaterials, vol. 28, pp. 4501-4511. 2007. (DOI: 10.1016/j.biomaterials.2007.06.030)
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| 32
| J. Vidal Rodríguez and J.A. Kaandorp: Inferring the distribution of Inter-Reaction Intervals for Diffusion-Limited Reactions on Lattices, Intl. J. Mod. Phys. C, vol. 18, nr 4 pp. 749-757. April 2007. (DOI: 10.1142/S0129183107011017)
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| J. Cui and J.A. Kaandorp: Mathematical modeling of calcium homeostasis in yeast cells, Cell Calcium, vol. 39, nr 4 pp. 337-348. Elsevier Science, April 2006. (DOI: doi:10.1016/j.ceca.2005.12.001)
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| J.A. Kaandorp: Groei en vorm van koralen & de invloed van atmosferische CO2 en stijgende zeetemperaturen, Ecologie & Ontwikkeling, (in Dutch) vol. 71, pp. 13-15. 2006.
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| 35
| K.J. Kruszynski; R. van Liere and J.A. Kaandorp: An Interactive Visualization System for Quantifying Coral Structures, in T. Ertl; K. Joy and B. Santos, editors, Eurographics/ IEEE-VGTC Symposium on Visualization, pp. 1-8. Benidorm, Spain, January 2006.
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| W.E.G. Müller; O.V. Kaluzhnaya; S.I. Belikov; M. Rothenberger; H.C. Schröder; A. Reiber; J.A. Kaandorp; B. Manz; D. Mietchen and F. Volke: Magnetic resonance imaging of the siliceous skeleton of the demosponge Lubomirskia baicalensis, Journal of Structural Biology, vol. 153, nr 1 pp. 31-41. 2006. (DOI: 10.1016/j.jsb.2005.09.008)
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp; P.M.A. Sloot and P. Hogeweg: Problem-Solving Environments for Biological Morphogenesis, Comput. Sci. Eng, vol. 8, nr 1 pp. 61-72. 2006. (DOI: 10.1109/MCSE.2006.11)
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| 38
| J. Vidal Rodríguez; J.A. Kaandorp; M. Dobrzyński and J.G. Blom: Spatial Stochastic Modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli, Bioinformatics, vol. 22, nr 15 pp. 1895-1901. 2006. (DOI: 10.1093/bioinformatics/btl271)
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| 39
| J.A. Kaandorp; P.M.A. Sloot; R.M.H. Merks; R.P.M. Bak; M.J.A. Vermeij and C. Maier: Morphogenesis of the branching reef coral Madracis mirabilis, Proc. Roy. Soc. B, vol. 272, nr 1559 pp. 127-133. January 2005.
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| 40
| J.A. Kaandorp: 'De witte dood': about coral bleaching and simulation models, 2005.
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| 41
| O.V. Kaluzhnaya; S.I. Belikov; H.C. Schröder; S. Zapf; A. Borejko; J.A. Kaandorp; A. Krasko; I.M. Müller and W.E.G. Müller: Dynamics of skeletal formation in the Lake Baikal sponge Lubomirskia baicalensis. Part I biological and biochemical studies, Naturwissenschaften, vol. 92, pp. 128-133. 2005.
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| 42
| K.J. Kruszynski; R. van Liere and J.A. Kaandorp: Quantifying performance of 3D skeletonization algorithms, in IASTED International Conference on Visualization, Imaging, and Image Processing (VIIP 2005), VIIP 2005, Benidorm, Spain, Benidorm, Spain, September 2005.
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| J. Cui and J.A. Kaandorp: Mathematical modelling of calcium homeostasis in yeast cells, in Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology and 3rd European Conference on Computational Biology (ISMB/ECCB), (abstract) pp. 215. Glasgow, Scotland, UK, July 2004.
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| 44
| J.A. Kaandorp and R.A. García Leiva: Morphological analysis of two- and three-dimensional images of branching sponges and corals, in A.M.T. Elewa, editor, Morphometrics - Applications in Biology and Paleontology, pp. 83-94. Springer-Verlag, 2004. ISBN 3-540-21429-1.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Polyp oriented modelling of coral growth, Journal of Theoretical Biology, vol. 228, nr 4 pp. 559-576. 2004.
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| 46
| J.A. Kaandorp; E.A. Koopman; P.M.A. Sloot; R.P.M. Bak; M.J.A. Vermeij and L.E.H. Lampmann: Simulation and analysis of flow patterns around the scleractinian coral Madracis mirabilis (Duchassaing and Michelotti), Phil. Trans. R. Soc. Lond. B, vol. 358 (1437), pp. 1551 - 1557. 2003.
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| 47
| J.A. Kaandorp: Modelling growth and form of stony corals and the influence of hydrodynamics on suspension feeding, in Proceedings 9th International Coral Reef Symposium, pp. 541-547. Bali, Indonesia, 2003.
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| 48
| T. Krul; J.A. Kaandorp and J.G. Blom: Modelling Developmental Regulatory Networks, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, ICCS 2003, in series Lecture Notes in Computer Science, vol. 2660, pp. 688-697. Springer Verlag, June 2003. ISBN 3-540-40194-6.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Problem Solving Environment for Modelling Stony Coral Morphogenesis, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, ICCS 2003, in series Lecture Notes in Computer Science, vol. 2657, pp. 639-648. Springer Verlag, June 2003. ISBN 3-540-40194-6.
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| 50
| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption, Journal of Theoretical Biology, vol. 224/2, pp. 153-166. September 2003.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in V. Capasso, editor, Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002, pp. 539-544. MIRIAM (Milan Research Centre for Industrial and Applied Mathematics), 2003.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Diffusion Limited Growth In Laminar Flows, International Journal of Modern Physics C, vol. 14, nr 9 pp. 1171-1182. 2003.
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| H. Afsarmanesh; R.G. Belleman; A.S.Z. Belloum; A. Benabdelkader; J.F.J. van den Brand; G.B. Eijkel; A. Frenkel; C. Garita; D.L. Groep; R.M.A. Heeren; Z.W. Hendrikse; L.O. Hertzberger; J.A. Kaandorp; E.C. Kaletas; V.V. Korkhov; C.T.A.M. de Laat; P.M.A. Sloot; D. Vasunin; A. Visser and H.H. Yakali: VLAM-G: A Grid-based virtual laboratory, Scientific Programming, (Special issue on Grid Computing) vol. 10, nr 2 pp. 173-181. (R.H. Perrott and B.K. Szymanski, editors), IOS Press, 2002. ISSN 1058-9244.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in ESMTB2002: 5th conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts, (abstract) European Society of Mathematical and Theoretical Biology, pp. 254. Milano, Italy, July 2002.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Spontaneous branching in a polyp oriented model of stony coral growth, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 88-96. Springer Verlag, April 2002. ISBN 3-54043591-3.
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| J.A. Kaandorp and P.M.A. Sloot: Morphological Models of Radiate Accretive Growth and the Influence of Hydrodynamics, Journal of theoretical Biology, vol. 209, nr 3 pp. 257-274. 2001.
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| J.A. Kaandorp: Simulation and visualization of processes at irregular and complex-shaped interfaces, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, (abstract) pp. 15. ASCI, May 2001. ISBN 90-803086-6-8.
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| J.A. Kaandorp and S. Gueron: Special issue on particle based modelling in biology, Future Generation Computer Systems, (Guest Editor) vol. 17, nr 7 pp. V-VI. May 2001.
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| 59
| J.A. Kaandorp and J.E. Kübler: The algorithmic beauty of seaweeds, sponges and corals, 191 pages. Springer-Verlag, Heidelberg, New York, 2001. ISBN 354067700.
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| 60
| P.M.A. Sloot; J.A. Kaandorp; A.G. Hoekstra and B.J. Overeinder: Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena, in A.Y. Zomaya; F. Ercal and S. Olariu, editors, Solutions to Parallel and Distributed Computing Problems: Lessons from Biological Sciences, pp. 1-46. Computer Centre University of Tromso, 2001.
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| H. Jones and J.A. Kaandorp: Modelling of growing natural forms, Tutorial T2, Eurographics 2000, 2000.
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| 62
| J.A. Kaandorp and P.M.A. Sloot: Growth and Form of Sponges and Corals in a Moving Fluid, in A. Carbone; M. Gromov and P. Prusinkiewicz, editors, Pattern Formation in Biology, Vision and Dynamics, pp. 24-41. World Scientific, 2000. ISBN 9810237928.
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| R.G. Belleman; J.A. Kaandorp; D. Dijkman and P.M.A. Sloot: GEOPROVE: Geometric Probes for Virtual Environments, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 817-827. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
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| R.G. Belleman; J.A. Kaandorp; D. Dijkman and P.M.A. Sloot: GEOPROVE: Geometric probes for virtual environments, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 38-43. ASCI, Delft, June 1999.
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| M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman: Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, ASCI, ASCI, Delft, June 1999.
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| J.A. Kaandorp: Thematic issue on Virtual Reality in Industry and Research, Future Generation Computer Systems, (Guest editorship) 1999.
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| J.A. Kaandorp: Morphological analysis of growth forms of branching marine sessile organisms along environmental gradients, Mar. Biol., vol. 134, pp. 295-306. 1999.
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| R.M.H. Merks; J.A. Kaandorp and P.M.A. Sloot: The interplay of hydrodynamics and genetic regulation in the morphogenesis of sponges and stony corals: pilot studies, in Theory and Mathematics in Biology and Medicine: Abstracts, European Society for Mathematical and Theoretical Biology (ESMTB) and Society for Mathematical Biology (SMB), pp. 345. 1999.
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| P.M.A. Sloot; J.A. Kaandorp; A.G. Hoekstra and B.J. Overeinder: Distributed Simulation with Cellular Automata: Architecture and Applications, in J. Pavelka; G. Tel and M. Bartosek, editors, SOFSEM'99 Theory and Practice of Informatics, Proceedings of 26th Seminar on Current Trends, in Theory and Practice of Informatics, Milovy, Czech Republic, November 27 - December 4, in series Lecture Notes on Computer Science, nr 1725 pp. 203-249. Springer-Verlag, 1999. ISBN 3-540-66694-X.
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| R.G. Belleman; J.A. Kaandorp and P.M.A. Sloot: Interactive environments for the exploration of large data sets., in B.M. ter Haar Romeny; D.H.J. Epema; J.F.M. Tonino and A.A. Wolters, editors, ASCI '98, Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, Lommel, Belgium, June 9-11, 1998, pp. 264-268. Advanced School for Computing and Imaging (ASCI), 1998.
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| R.G. Belleman; J.A. Kaandorp and P.M.A. Sloot: A Virtual Environment for the Exploration of Diffusion and Flow Phenomena in Complex Geometries, Future Generation Computer Systems, vol. 14, nr 3-4 pp. 209-214. Elsevier Science Publishers B. V., Amsterdam, The Netherlands, The Netherlands, 1998. (DOI: 10.1016/S0167-739X(98)00024-7)
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| J.A. Kaandorp: Guest Editorial EURO-VR Mini-conference '97: Virtual reality in industry and research, Future Generation Computer Systems, vol. 14, nr 3-4 pp. 143-145. 1998.
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| J.A. Kaandorp: Special Issue on EURO-VR Mini-conference '97: Virtual reality in industry and research, Future Generation Computer Systems, (Guest Editorship) 1998.
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| 74
| J.A. Kaandorp and P.M.A. Sloot: Parallel simulation of accretive growth in 3-dimensions, Biosystems, vol. 44, nr 3 pp. 181-192. 1997.
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| J.A. Kaandorp and P.M.A. Sloot: A mesoscopic Model for simulating the combined effect of hydrodynamics and diffusion on nutrient driven growth processes, in F. Karsch; B. Monien and H. Satz, editors, Proceeddings of the international conference Multi-scale Phenomena and their Simulation conference, pp. 250-254. World Scientific, Singapore, 1997.
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| P.M.A. Sloot; A. Schoneveld; J.F. de Ronde and J.A. Kaandorp: Large scale simulations of complex systems Part I: conceptual framework, (SFI Working Paper: 97-07-070) Santa Fe Instute for Complex studies, number 97-07-070, 1997.
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| 77
| J.A. Kaandorp and P.M.A. Sloot: Modelling growth and form of marine sessile suspension feeders, in M.T. Michalewicz, editor, Advances in Computational Life Sciences Vol. I, pp. 119-132. CSIRO Publishing, Collingwood Australia, 1996.
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| 78
| J.A. Kaandorp and P.M.A. Sloot: Modelling diffusion and flow limited morphogenesis of marine sessile orginisms, in 3rd European conference of mathematics applied to biology and medicine, (abstract) Heidelberg, 1996.
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| J.A. Kaandorp; C.P. Lowe; D. Frenkel and P.M.A. Sloot: The effect of nutrient diffusion and flow on coral morphology, Physical Review Letters, vol. 77, nr 11 pp. 2328-2331. March 1996.
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| J.A. Kaandorp and P.M.A. Sloot: Modelling and simulation of accretive growth and form on a parallel platform, in E.J.H. Kerckhoffs; P.M.A. Sloot; J.F.M. Tonino and A.M. Vossepoel, editors, ASCI '96, Proceedings of the second annual conference of the Advanced School for Computing and Imaging, pp. 54-59. Advanced School for Computing and Imaging (ASCI), Delft, 1996.
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| 81
| J.A. Kaandorp: From July 1996 until March 1997 (monthly), cover picture and abstract, Mathematical Seminar, (in Japanese) 1996.
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| 82
| J.A. Kaandorp: De invloed van diffusie en stroming op groei en vorm, Afleiding, (in Dutch) vol. 6, pp. 2-5. 1996.
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| J.A. Kaandorp: Modelling and simulation of the effect of diffusion and flow on growth processes, in C.E. Vandoni, editor, Proceedings 1996 CERN School of computing, pp. 239-246. CERN European Organization for Nuclear Research, Geneva, 1996.
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| J.A. Kaandorp: Simulation of growth and form of sponges and corals and the influence of the physical environment, in J.E. Dubois and N. Gershon, editors, Modeling complex data for creating information, pp. 199-208. Springer-Verlag, Berlin, 1996.
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| 85
| H. McEvoy and J.A. Kaandorp: On modelling environmentally-sensitive growth forms and cellular automata using multiset transformation, Fractals, vol. 4, nr 4 pp. 509-520. 1996.
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| 86
| A. Schoneveld; J.F. de Ronde; P.M.A. Sloot and J.A. Kaandorp: A Parallel Cellular Genetic Algorithm Used in Finite Element Simulation, in H-.M. Voigt; W. Ebeling; I. Rechenberg and H-.P. Schwefel, editors, Parallel Problem Solving from Nature (PPSN IV), in series LNCS, pp. 533-542. 1996.
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| 87
| P.M.A. Sloot and J.A. Kaandorp: Particle modelling environment for dynamic complex system simulation, in R. van Grondelle; S. van der Kolk; O.J.G. Somsen; H.V. Westerhoff and J.E. Wijker, editors, Biocomplexity and the essence of the living state, pp. 83-85. Free University, Amsterdam, 1996.
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| 88
| P.M.A. Sloot; D. Frenkel; J.A. Kaandorp and R. van Driel: Modelling and simulation of reactivity, diffusion, and flow in biological systems using the lattice Boltzmann method, in R. van Grondelle; S. van der Kolk; O.J.G. Somsen; H.V. Westerhoff and J.E. Wijker, editors, Biocomplexity and the essence of the living state, pp. 80-82. Free University, Amsterdam, 1996.
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| 89
| J.A. Kaandorp and P.M.A. Sloot: A Parallel Hybrid Solver for Diffusion Limited Growth, in Finmo,L. and Fritzon,P., editors, Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings, pp. 254-258. IOS Press, Amsterdam, Netherlands, 1995.
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| 90
| J.A. Kaandorp and P.M.A. Sloot: Parallel Solvers for Simulating Morphogenesis, PowerXplorer User Report, 1st edition, pp. 77-84. Parsytec, Aachen, Germany, May 1995.
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| 91
| J.A. Kaandorp; C.P. Lowe; D. Frenkel; P.M.A. Sloot and N.C. Rozemeijer: Flow and diffusion Limited growth of aggregates, (video made at the University of Amsterdam) 1995.
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| 92
| J.A. Kaandorp: Analysis and synthesis of radiate accretive growth in three dimensions, Journal of Theoretical Biology, vol. 175, pp. 39-55. 1995.
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| 93
| A. Schoneveld; J.A. Kaandorp and P.M.A. Sloot: Parallel Dynamical Complex Systems, PowerXplorer User Report, 1st edition, pp. 152-156. Parsytec, Aachen, Germany, May 1995.
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| 94
| P.M.A. Sloot; J.A. Kaandorp and A. Schoneveld: Dynamic Complex Systems (DCS): a new approach to parallel computing in computational physics, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-95-08, December 1995.
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| 95
| J.A. Kaandorp: Fractal modelling: growth and form in biology, Springer-Verlag, Berlin, New York, 1994. ISBN: 3-540-56685-6, ISBN: 0-387-56685-6.
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| 96
| J.A. Kaandorp: Diffusion limited radiate accretive growth, in R. Gruber and M. Tomassini, editors, Proceedings of the 6th joint EPS-APS International Conference on Physics Computing, European Physical Society, pp. 281-284. European Physical Society, Geneva, Switserland, Lugano, Switserland, August 1994.
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| 97
| J.A. Kaandorp: Growth models of sponges using geometric modelling techniques, in R.W.M. van Soest; Th.M.G. van Kempen and J.C. Braekman, editors, Sponges in time and space, pp. 235-240. Balkema, Rotterdam, The Netherlands, Amsterdam, The Netherlands, 1994.
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| 98
| J.A. Kaandorp: Diffusion-limited growth of sponges, (In section 6 of the WWW collection "Visual models of morphogenesis: a guided tour" by M. Hammel and P. Prusinkiewicz (eds) available under URL:http://www.cpsc.ucalgary.ca/projects/bmv/index.html) 1994.
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| 99
| J.A. Kaandorp: Simulation of environmentally induced growth forms in marine sessile organisms, in T. Vicsek; M. Shlesinger and M. Matsushita, editors, Fractals in natural sciences, pp. 96-100. World Scientific, Singapore, 1994.
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| 100
| J.A. Kaandorp: A formal description of radiate accretive growth, Journal of Theoretical Biology, vol. 166, pp. 149-161. 1994.
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| 101
| J.A. Kaandorp: 2D and 3D modelling of marine sessile organisms, in A.J. Crilly; R.A. Earnshaw and H. Jones, editors, Applications of fractals and chaos, pp. 41-61. Springer-Verlag, New York, Berlin, 1993.
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| 102
| J.A. Kaandorp: Simulation of environmentally induced growth forms in marine sessile organisms, Fractals, vol. 1, nr 3 pp. 375-379. 1993.
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| 103
| J.A. Kaandorp: Simulating radiate accretive growth using iterative geometric constructions, in E. Louis; L.M. Sander; P. Meakin and J.M. Garcia-Ruiz, editors, Growth patterns in physical sciences and biology, NATO ASI Series B: Physics Vol. 304, pp. 331-340. Plenum Press, New York, 1993.
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| 104
| J.A. Kaandorp: Fractal modelling of growth forms of the sponge Haliclona oculata, in J. Demongeot and V. Capasso, editors, Mathematics applied to biology and medicine, (Proc. first European Conference of Mathematics applied to Biology and Medicine, Grenoble, France) pp. 104-106. Wuerz Publishing Ltd, Winnipeg, Canada, 1993.
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| 105
| J.A. Kaandorp: Modelling growth forms of biological objects using fractals, PhD thesis, University of Amsterdam, (Promotor: Prof. Dr. Ir. F.C.A. Groen, 2nd promotor: Dr. J.H. Stock, co-promotor: Dr. E.H. Dooijes, 2nd co-promotor: Prof. Dr. H.A. Lauwerier) 1992.
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| 106
| J.A. Kaandorp: Sponges in Space, (video made at the University of Calgary, Canada) 1992.
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| 107
| J.A. Kaandorp and M.J. de Kluijver: Verification of fractal growth models of the sponge Haliclona oculata (Porifera; class Demospongiae) with transplantation experiments, Marine Biology, vol. 113, pp. 133-143. 1992.
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| 108
| J.A. Kaandorp: Modelling growth forms of the sponge Haliclona oculata (Porifera; Demospongiae) using fractal techniques, Marine Biology, vol. 110, pp. 203-215. 1991.
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| 109
| J.A. Kaandorp: Modelling growth forms of sponges with fractal techniques, in A.J. Crilly; R.A. Earnshaw and H. Jones, editors, Fractals and Chaos, pp. 71-88. Springer-Verlag, New York, Berlin, 1991.
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| 110
| J.A. Kaandorp: Fractal growth models of sponges (Porifera), Netherlands Journal of Zoology, vol. 199, pp. 140. 1990.
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| 111
| H.A. Lauwerier and J.A. Kaandorp: Fractals (mathematics, programming and applications), in M.M. de Ruiter, editor, Advances in computer graphics III, pp. 177-205. Springer-Verlag, Berlin, New York, 1988.
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| 112
| J.A. Kaandorp: Interactive generation of fractal objects, in G. Marechal, editor, Proceedings of the European Computer Graphics Conference, pp. 181-196. North-Holland, Amsterdam, New York, 1987.
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| 113
| J.A. Kaandorp: Rocky substrate communities of the infralittoral fringe of the Boulonnais coast, NW France: a quantitative survey, Marine Biology, vol. 92, pp. 255-265. 1986.
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