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| J. Cui; J.A. Kaandorp; P.M.A. Sloot and P.S. Thiagarajan: Simulating Calcineurin-Centered Calcium Signaling Network in Cardiac Myocytes, in J.E. García and V.R. Wright, editors, Congestive Heart Failure: Symptoms, Causes and Treatment, in series Cardiology Research and Clinical Developments, pp. 111-127. Nova Publishers, 2010. ISBN 978-1-60876-677-2.
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| J. Cui; J.A. Kaandorp; P.M.A. Sloot; C.M. Lloyd and M.V. Filatov: Calcium Homeostasis and Signaling in Yeast Cells and Cardiac Myocytes, FEMS Yeast Research, vol. 9, nr 8 pp. 1137-1147. Wiley InterScience, Aug 2009. (DOI: 10.1111/j.1567-1364.2009.00552.x)
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| J. Cui: Mathematical Modeling of Metal Ion Homeostasis and Signaling Systems, PhD thesis, Universiteit van Amsterdam, (Promotor: Prof. Dr. P.M.A. Sloot, Co-promotor: Dr. J.A. Kaandorp) March 2009.
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| 4
| J. Cui; J.A. Kaandorp; O.O. Ositelu; V. Beaudry; A. Knight; Y. Fomekong-Nanfack and K.W. Cunningham: Simulating Calcium Influx and Free Calcium Concentrations in Yeast, Cell Calcium, vol. 45, nr 2 pp. 123-132. 2009. (DOI: 10.1016/j.ceca.2008.07.005)
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| J. Cui; J.A. Kaandorp and C.M. Lloyd: Simulating In Vitro Transcriptional Response of Zinc Homeostasis System in Escherichia coli, BMC Systems Biology, vol. 2, pp. 89+14. 2008. (DOI: 10.1186/1752-0509-2-89)
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| J. Cui and J.A. Kaandorp: Simulating Complex Calcium-Calcineurin Signaling Network, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 5103, pp. 110-119. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69388-8.
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| J. Cui and J.A. Kaandorp: Mathematical modeling of calcium homeostasis in yeast cells, Cell Calcium, vol. 39, nr 4 pp. 337-348. Elsevier Science, April 2006. (DOI: doi:10.1016/j.ceca.2005.12.001)
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| J. Cui and J.A. Kaandorp: Mathematical modelling of calcium homeostasis in yeast cells, in Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology and 3rd European Conference on Computational Biology (ISMB/ECCB), (abstract) pp. 215. Glasgow, Scotland, UK, July 2004.
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| J. Cui: Mathematical Modelling of Calcium homeostasis in Yeast Cells, MSc thesis, University of Amsterdam, Amsterdam, The Netherlands, (Advisor: J.A. Kaandorp) August 2003.
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