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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp; P.M.A. Sloot and P. Hogeweg: Problem-Solving Environments for Biological Morphogenesis, Comput. Sci. Eng, vol. 8, nr 1 pp. 61-72. 2006. (DOI: 10.1109/MCSE.2006.11)
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| J.A. Kaandorp; P.M.A. Sloot; R.M.H. Merks; R.P.M. Bak; M.J.A. Vermeij and C. Maier: Morphogenesis of the branching reef coral Madracis mirabilis, Proc. Roy. Soc. B, vol. 272, nr 1559 pp. 127-133. January 2005.
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| R.M.H. Merks: Droogzwemmen in het koraalrif. Computersimulaties verklaren koraalgroei, Nederlands Tijdschrift voor Natuurkunde, (in Dutch) vol. 71, nr 10 pp. 314-317. 2005.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Polyp oriented modelling of coral growth, Journal of Theoretical Biology, vol. 228, nr 4 pp. 559-576. 2004.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Problem Solving Environment for Modelling Stony Coral Morphogenesis, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, ICCS 2003, in series Lecture Notes in Computer Science, vol. 2657, pp. 639-648. Springer Verlag, June 2003. ISBN 3-540-40194-6.
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| R.M.H. Merks: Branching Growth in Stony Corals - a Modelling Approach, PhD thesis, University of Amsterdam, Amsterdam, The Netherlands, (Promotor: Prof. Dr. P.M.A. Sloot, Co-promotores: Dr. Ir. A.G. Hoekstra; Dr. J.A. Kaandorp) May 2003.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption, Journal of Theoretical Biology, vol. 224/2, pp. 153-166. September 2003.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in V. Capasso, editor, Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002, pp. 539-544. MIRIAM (Milan Research Centre for Industrial and Applied Mathematics), 2003.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Diffusion Limited Growth In Laminar Flows, International Journal of Modern Physics C, vol. 14, nr 9 pp. 1171-1182. 2003.
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| R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: The moment propagation method for advection-diffusion in the lattice Boltzmann method: validation and Péclet number limits, Journal of Computational Physics, vol. 183, pp. 563-576. Academic Press Professional, Inc., San Diego, CA, USA, 2002. ISSN 0021-9991. (DOI: 10.1006/jcph.2002.7209)
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in ESMTB2002: 5th conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts, (abstract) European Society of Mathematical and Theoretical Biology, pp. 254. Milano, Italy, July 2002.
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| R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Spontaneous branching in a polyp oriented model of stony coral growth, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 88-96. Springer Verlag, April 2002. ISBN 3-54043591-3.
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| R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method, in F. Hossfeld and K. Binder, editors, Europhysics Conference on Computational Physics. Aachen, Germany, 5-8 September 2001. Book of Abstracts., (abstract) John von Neumann Institute for Computing, in series Publication Series of the John von Neumann Institute for Computing, vol. 8, pp. A140. 2001.
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| R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, pp. 137-141. ASCI, May 2001. ISBN 90-803086-6-8.
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| R.M.H. Merks; J.A. Kaandorp and P.M.A. Sloot: The interplay of hydrodynamics and genetic regulation in the morphogenesis of sponges and stony corals: pilot studies, in Theory and Mathematics in Biology and Medicine: Abstracts, European Society for Mathematical and Theoretical Biology (ESMTB) and Society for Mathematical Biology (SMB), pp. 345. 1999.
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